The health of Chautauqua Lake is the main concern of the Alliance. Below is a list of Chautauqua Lake Water Quality Projects categories that the Alliance helps support in collaboration with local organizations, municipalities and community members.

• Partnerships, Collaboration, and Education
• Sewage Inputs and Wastewater Management
• Agricultural Practices and Management
• Forestry Practices and Management
• Stream Corridor and Shoreline Management
• Planning and Land Use
• Municipal Roads and Ditches
• Floodplain and Wetland Management
• Development, Infrastructure, and Storm Water Management
• Submerged Aquatic Vegetation & Algae
• Invasive Species/Excessive Populations of Native Species